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Refactored the output of prepare_data, the layout engin separated from XML...

Pavel Kalouguine a demandé de fusionner design_make_flat_list_of_uplinks vers main

Refactored the output of prepare_data, the layout engin separated from XML output, fixed bug with skipped levels.

There are lots of changes, may need more thorough testing. This branch fixes the bug #12 (closed) , producing the floowing diagram:

skipped_level2

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